Andrew Su

Andrew Su

Andrew Su

Professor

Department of Integrative, Structural and Computational Biology
The Scripps Research Institute
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Bio

Andrew is a Professor at the Scripps Research Institute in the Department of Integrative, Structural and Computational Biology (ISCB). His research focuses on building and applying bioinformatics infrastructure for biomedical discovery. His research has a particular emphasis on leveraging crowdsourcing for genetics and genomics. Representative projects include the Gene Wiki, BioGPS, MyGene.Info, and Mark2Cure, each of which engages the crowd to help organize biomedical knowledge. These resources are collectively used millions of times every month by members of the research community, by students, and by the general public.

Education

Ph.D., Chemistry; The Scripps Research Institute
BA, Chemistry, Computing and Information Systems, and Integrated Science; Northwestern University

Recent Posts

Open letter to ISCB regarding diversity in bioinformatics

by Andrew Su | Jul 14, 2015 | bioinformatics, ISCB

Dear President Valencia, and ISCB Officers and Directors, The ISCB plays a critical role in our field, and I applaud the tireless efforts of the officers and directors. In the spirit of wanting to support the ISCB in shaping the future of...

Open source, open science, citizen science – Join us!

by Andrew Su | Apr 15, 2015 | BioGPS, citizen science, Gene Wiki, jobs, mark2cure, open participation science, open science, recruiting

If you follow our lab at all you’ve probably noticed some themes emerging in how we approach bioinformatics and biomedical research. To enumerate a few of those themes, we believe in: Open source: We have benefited from the long tradition of...

Crowdsourcing for algorithm optimization and improvement

by Andrew Su | Apr 13, 2015 | crowdsourcing, topcoder

Crowdsourcing is clearly a theme in our lab, but one flavor of crowdsourcing that we hadn’t experimented with extensively is the use of prize-based contests. Sites like TopCoder, Innocentive, and Kaggle have shown that contests can be a...

TEDx talk on Citizen Science for Biology

by Andrew Su | Nov 20, 2014 | BioThings, citizen science, mark2cure, presentation

Earlier this year, Syd Peterson invited me to give a talk at TEDxClaremontColleges. When Syd told me that the theme was “Unexpected Narratives”, I wondered how my lab’s research could possibly fit. To me, it felt like an...

Big Data Center of Excellence

by Andrew Su | Oct 9, 2014 | BD2K, big data, grant

Today, the NIH announced several new awards under the Big Data To Knowledge (BD2K) initiative. I’m very excited to announce that our group will be participating in one of the BD2K Centers of Excellence. Our awarded proposal is titled “A...

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Recent Publications

Drug Repurposing using consilience of Knowledge Graph Completion methods
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Author Correction: Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing
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Perspectives on tracking data reuse across biodata resources
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Repositioning the Early Pathology of Type 1 Diabetes to the Extraislet Vasculature
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Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
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An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges
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DrugMechDB: A Curated Database of Drug Mechanisms
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BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs
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DrugMechDB: A Curated Database of Drug Mechanisms
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BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs
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for complete publication list, see google scholar