by ginger | Aug 25, 2016 | BioGPS, data release, exac, mygene.info
With the publication of a new paper in Nature, the Exome Aggregation Consortium (ExAC) has received some much deserved attention on their open data/open access practice. ExAC variant annotation data has been available for awhile through MyVariant.info; however, their...
by ginger | Aug 19, 2016 | BioGPS, plugin, spotlight
The Zebrafish Model Organism Database (ZFIN) has served the scientific community for over twenty years. As with the Rat Genome Database, which was previously featured in our Spotlight series, ZFIN also manages an InterMine-based resource called ZebrafishMine. The ZFIN...
by Chunlei Wu | Aug 18, 2016 | BioGPS, client, mygene, mygene.info, mygene.py, newrelease, python
A few weeks ago, we released MyGene.info v3 API, which brings changes to exon field data structure and added accession version numbers to refseq and accession fields, along with some other back-compatible changes. Our Python client mygene module is now updated to use...
by ginger | Aug 5, 2016 | BioGPS, plugin, spotlight
RatMine is one of several InterMine-based resources available as plugins in BioGPS. Unlike FlyMine and HumanMine (which are run by the InterMine team), RatMine is one of several resources available in the Rat Genome Database (RGD) offered by the Biomedical Informatics...
by ginger | Jul 22, 2016 | BioGPS, plugin, spotlight
In our last spotlight we covered FlyMine, one of two mines maintained by the InterMine group at Cambridge University. This week’s spotlight is on HumanMine, the second of the two aforementioned mines. Yo Yehudi (developer), and Rachel Lyne (biologist) were kind enough...
by Sebastien Lelong | Jul 7, 2016 | api, BioGPS, mygene, mygene.info, newrelease
