by Andra Waagmeester | Jul 13, 2017 | semantic web, SPARQL, Wikidata
This blog is about running federated SPARQL queries on Wikidata. A federated query is a special type of SPARQL query that runs on more then one SPARQL endpoint. It allows access to multiple linked data resources in a single query. Below is a template of a federated...
by bgood | Jul 7, 2015 | befree, BioGPS, crowdsourcing, deepdive, job, mark2cure, natural-language-processing, nlp, postdoc, recruiting, san diego, semantic web, staff-scientist, sulab, tsri
Our laboratory at the The Scripps Research Institute in beautiful San Diego, California is recruiting a talented individual to help us use crowdsourcing to push the boundaries of biomedical information extraction and its applications. We are looking for someone...
by Andrew Su | Dec 4, 2013 | bio-ontologies, bioinformatics, BioThings, breast cancer, community intelligence, community-annotation, crowdsourcing, games, grant, mass collaboration, semantic web
I offer an idea, and a proposal… What: We want to structure biological knowledge by annotating BioThings (genes, proteins, mutations, diseases, and drugs) in biomedical research articles. We want to comprehensively annotate the mentions of these BioThings in...
by eclarke | Apr 30, 2012 | Gene Wiki, genewiki+, mashup, semantic web, semantic wikipedia, SPARQL, wiki, wikipedia
Our presentation at the Semantic MediaWiki Conference was a smashing hit! I discussed the software we developed to create GeneWiki+, which we’ve christened mwsync. Mwsync is a cool little Java framework that makes it easy to maintain a live mirror of any...
by bgood | Apr 23, 2012 | Gene Wiki, genewiki+, semantic web, SPARQL, sulab
Thanks to Leyla and Alex Garcia-Castro from UniProt and Florida State University respectively, we now have access to a SPARQL endpoint for the data in the Gene Wiki. Access it live here:http://virtuoso.idiginfo.org/sparql(update on 4-28-12 , that is down and a...
by bgood | Mar 22, 2012 | Gene Wiki, genewiki+, semantic links, semantic web, semantic wikipedia, sulab, SWL, wiki
A while back, I posted an entry here called “Stepping towards a Semantic Wikipedia” that quickly became the most-visited post on this blog. Today, after several months of waiting, I discovered by accident that the official peer-reviewed article on...
