by Andrew Su | May 29, 2014 | code, GO, long tail
Recently, someone emailed me to ask how I got the data behind this figure that I often use in the introductions of my talks: This figure shows that while there are few genes that are very well annotated (100s of GO annotations manually annotated by biocurators), that...
by Andrew Su | Jun 11, 2013 | bioinformatics, database, long tail
As part of building the case for creating our proposed CMOD resource, we wanted to know just how quickly the number of sequenced genomes was increasing. The thinking is that the more genomes are being sequenced, the more genomes there are that are going with virtually...
by ACarolino | Aug 9, 2012 | community-annotation, database, gene ontology, genome biology, GO, long tail
This guest post was written by Adriel Carolino, a summer intern who has been spearheading this project to create a Centralized Model Organism Database (CMOD). The recent explosion of metagenomic sequencing has resulted in an immense expanse of microbial genetic...
by Andrew Su | Sep 23, 2011 | community intelligence, games, GO, long tail
Part 1: Introduction to the concept Part 2: The prototype game (this post) Part 3: Evaluation framework We recently posted on this blog the idea of creating a computer engine to play the game 20 questions. But instead of asking users to thing of common objects in the...
by Andrew Su | Jul 26, 2011 | community intelligence, games, GO, long tail
Part 1: Introduction to the concept (this post) Part 2: The prototype game Part 3: Evaluation framework If I asked you to think of your favorite gene, do you think I could guess the identity of that gene by first asking you twenty yes / no questions? I personally...
by Andrew Su | Sep 15, 2009 | BioGPS, community intelligence, Gene Wiki, long tail, usage stats
Our second paper on the Gene Wiki ijkey=70heWcVDzEvSzl5&keytype;=ref “>was published online today in the journal Nucleic Acids Research. It will also be included in the 2010 Database issue in January. From the concluding paragraph of the introduction:Here, we...