by Greg Stupp | Aug 31, 2018 | bioinformatics, Biomedical Informatics, biomedical research, Gene Wiki, SPARQL, Uncategorized, Wikidata
We recently gained access to the anonymised logs of several hundred million SPARQL queries from the Wikidata SPARQL endpoint. This blog post contains some discussion about the main takeaway points, while the full analysis and code can be found here. What are we...
by Andra Waagmeester | Jul 13, 2017 | semantic web, SPARQL, Wikidata
This blog is about running federated SPARQL queries on Wikidata. A federated query is a special type of SPARQL query that runs on more then one SPARQL endpoint. It allows access to multiple linked data resources in a single query. Below is a template of a federated...
by Andrew Su | May 7, 2012 | disease ontology, genewiki+, SPARQL
[View the story “Gene Wiki Plus extensions” on Storify]Gene Wiki Plus extensionsStorified by Andrew Su · Mon, May 07 2012 14:03:56The uber-hacker Pierre posted a great blog post about using getting gene-disease mappings from the the Human Disease...
by eclarke | Apr 30, 2012 | Gene Wiki, genewiki+, mashup, semantic web, semantic wikipedia, SPARQL, wiki, wikipedia
Our presentation at the Semantic MediaWiki Conference was a smashing hit! I discussed the software we developed to create GeneWiki+, which we’ve christened mwsync. Mwsync is a cool little Java framework that makes it easy to maintain a live mirror of any...
by bgood | Apr 23, 2012 | Gene Wiki, genewiki+, semantic web, SPARQL, sulab
Thanks to Leyla and Alex Garcia-Castro from UniProt and Florida State University respectively, we now have access to a SPARQL endpoint for the data in the Gene Wiki. Access it live here:http://virtuoso.idiginfo.org/sparql(update on 4-28-12 , that is down and a...
