by Greg Stupp | Aug 31, 2018 | Uncategorized
This is part 2 of a blog post describing Wikidata SPARQL query logs. Part 1 is here. In this part, we’ll look at the most used items and specifically look at diseases, drugs, genes and proteins. And then look at co-occurrence of properties within queries.. Below...
by Greg Stupp | Aug 31, 2018 | bioinformatics, Biomedical Informatics, biomedical research, Gene Wiki, SPARQL, Uncategorized, Wikidata
We recently gained access to the anonymised logs of several hundred million SPARQL queries from the Wikidata SPARQL endpoint. This blog post contains some discussion about the main takeaway points, while the full analysis and code can be found here. What are we...
by Jacob Bruggemann | Apr 12, 2016 | citizen science, crowdsourcing, cryo-em, Uncategorized, zooniverse
In a previous blog post, we asked for beta testers for our Zooniverse-hosted citizen science project Microscopy Masters. Thanks to the feedback we received from our initial testing run, the project was approved for a full launch by Zooniverse and is up and running on...
by Melissa Lau | Dec 29, 2014 | BioGPS, GeneOfTheWeek, Uncategorized
Sometimes, the entire month of December feels like an endless stream of holiday parties, non-stop feasting, and way too many cookies. Since my holiday vices tend toward roast duck and copious amounts of sticky rice, I’m definitely looking forward to a more...
by Andrew Su | Aug 8, 2011 | Gene Wiki, ISMB2011, Uncategorized
Genomeweb’s BioInform newsletter just published a profile of our Gene Wiki effort (free registration required). The article was prompted by my keynote presentation and Ben Good’s paper in the Bio-ontologies SIG at ISMB. Inspired to get more involved in the...
